Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4914Hypothetical protein; Family membership. (211 aa)    
Predicted Functional Partners:
sce4915
Urea amidolyase-related protein.
   
 0.970
sce4916
Putative amino acid permease; Family membership.
 
   
 0.854
sce4913
Hypothetical protein; Family membership.
 
    
0.761
sce1940
Putative periplasmic substrate-binding protein; Family membership.
 
     0.699
sce3376
ABC transport system substrate-binding protein; Specificity unclear.
 
     0.595
sce7110
Hypothetical protein; COG: Sortase and related acyltransferases.
  
     0.483
amtR
Transcriptional regulator, tetR family.
 
     0.479
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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