STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4916Putative amino acid permease; Family membership. (521 aa)    
Predicted Functional Partners:
sce4915
Urea amidolyase-related protein.
 
   
 0.863
sce4914
Hypothetical protein; Family membership.
 
   
 0.854
sce4913
Hypothetical protein; Family membership.
 
   
 0.795
sce4566
Amino acid transporter; Family membership.
  
     0.710
amtR
Transcriptional regulator, tetR family.
 
     0.440
sce6413
Putative membrane protein; Family membership.
 
     0.415
treS
Trehalose synthase; High confidence in function and specificity.
    
 0.405
sce3064
Alpha amylase, catalytic region; Family membership.
    
 0.405
amyA
Alpha-amylase; High confidence in function and specificity.
    
 0.405
sce6847
Glycosyl hydrolase, family; Family membership; Belongs to the glycosyl hydrolase 13 family.
    
 0.405
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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