Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4927Hypothetical protein. (743 aa)    
Predicted Functional Partners:
pyrG1
Putative CTP synthase; Family membership.
  
    0.796
celC
Cellulase; High confidence in function and specificity; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.772
licS
Endo-beta-1,3-1,4 glucanase; High confidence in function and specificity.
  
     0.760
sce2860
Outer membrane protein, putative.
  
  
 0.758
ompH
Putative membrane protein.
  
  
 0.758
sce8516
Hypothetical protein predicted by Glimmer/Critica.
  
     0.753
sce6007
Putative mannanase; Family membership; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.738
celG
Cellulase; High confidence in function and specificity; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.707
sce2729
Hypothetical protein predicted by Glimmer/Critica.
  
     0.699
yvpA
Similar to pectate lyase.
  
     0.697
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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