Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yvpASimilar to pectate lyase. (383 aa)    
Predicted Functional Partners:
pelB
PelB protein; High confidence in function and specificity.
  
  
 0.976
pelA
PelA protein; High confidence in function and specificity.
  
  
 0.976
sce4079
Hypothetical protein predicted by Glimmer/Critica.
  
  
 0.944
sce5832
Probable pectate lyase precursor; Family membership.
  
  
 0.935
sce5551
Endo-1,4-beta-xylanase; Unnamed protein product; Family membership; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
   0.783
cbhA
Cellulose 1,4-beta-cellobiosidase; High confidence in function and specificity; Belongs to the glycosyl hydrolase family 6.
  
   0.782
sce0965
Glycosyl hydrolase family 11 member; Family membership; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
     0.774
sce2869
Putative secreted protein; Family membership; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
     0.774
sce7850
Alpha-L-arabinofuranosidase precursor; Family membership.
  
     0.774
sce7853
Exported O-glycosyl hydrolase; Family membership.
  
     0.774
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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