STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce4944Putative monooxygenase; Specificity unclear. (547 aa)    
Predicted Functional Partners:
sce9229
Putative esterase/lipase; Family membership.
  
 0.941
sce4852
Hypothetical protein; Acyl-CoA dehydrogenases.
  
 
 0.662
sce0600
Putative hydroxylase.
  
 
 0.660
sce4945
Conserved hypothetical membrane protein,probable permease of the major facilitator superfamily.
       0.586
sce2334
Hypothetical protein.
  
   
 0.554
sce4947
Hypothetical protein predicted by Glimmer/Critica.
       0.551
sce4946
Hypothetical protein.
       0.547
sce0547
Cation efflux system protein; High confidence in function and specificity.
  
    0.546
czcD
Cation efflux family protein; High confidence in function and specificity.
  
    0.546
sce2876
Putative hydroxylase.
  
 
 0.539
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.