Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce4991FHA domain protein. (430 aa)    
Predicted Functional Partners:
sce4988
Uncharacterized protein conserved in bacteria.
 
  
 0.847
sce4846
Uncharacterized protein conserved in bacteria.
 
  
 0.831
sce0703
Hypothetical protein.
  
     0.772
sce7690
Hypothetical protein.
  
     0.770
sce5929
Hypothetical protein.
  
     0.769
sce6585
Predicted membrane protein.
  
     0.768
sce0473
Hypothetical protein predicted by Glimmer/Critica.
  
     0.767
sce7370
Hypothetical protein-transmembrane prediction.
  
     0.767
sce4535
Hypothetical protein predicted by Glimmer/Critica.
  
     0.766
sce4985
Uncharacterized protein conserved in bacteria.
 
  
 0.766
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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