STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce4996Hypothetical protein DUF 1316 domain. (139 aa)    
Predicted Functional Partners:
sce4982
Uncharacterized protein conserved in bacteria.
 
  
 0.964
sce4846
Uncharacterized protein conserved in bacteria.
 
  
 0.949
sce4995
Hemolysin-coregulated protein (uncharacterized).
 
  
 0.943
sce4998
Uncharacterized protein conserved in bacteria.
 
  
 0.943
sce4997
Uncharacterized protein conserved in bacteria.
 
  
 0.942
sce4994
Hemolysin-coregulated protein (uncharacterized).
 
  
 0.910
sce4983
Uncharacterized protein conserved in bacteria.
 
  
 0.876
sce7699
Putative membrane protein.
 
  
 0.860
sce4988
Uncharacterized protein conserved in bacteria.
 
  
 0.825
sce4981
Uncharacterized protein conserved in bacteria.
 
  
 0.809
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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