STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce5022Hypothetical protein; High confidence in function and specificity. (343 aa)    
Predicted Functional Partners:
sce8261
Polyketide synthase type I; Family membership.
 
 
 0.931
sce3813
Beta-ketoacyl-ACP synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
      0.858
sce8851
Putative NADPH:quinone reductase; Family membership.
 
     0.750
sce2169
Hypothetical protein; NADPH:quinone reductase and related Zn-dependent oxidoreductases.
 
     0.720
sce3192
Polyketide synthase; Family membership.
 
 
 0.675
sce3190
Polyketide synthase; Family membership.
 
 
 0.642
sce5023
Hypothetical protein.
       0.615
sce0356
Thioesterase; Family membership.
    
 0.592
sce6823
NRPS/PKS hybrid.
  
 
 0.481
sce2387
Non-ribosomal peptide synthetase; Family membership.
  
 
 0.479
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.