Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce5025DUF829 domain hypothetical protein. (199 aa)    
Predicted Functional Partners:
sce4876
Hypothetical protein.
  
     0.654
yliB
Hypothetical protein; High confidence in function and specificity.
       0.536
sce0956
Hypothetical protein.
  
     0.481
sce4360
Protein of unknown function.
  
     0.474
sce5012
Hypothetical protein.
  
     0.457
sce1131
Predicted nucleic acid-binding protein contains PIN domain.
  
     0.452
sce4237
Uncharacterized protein conserved in cyanobacteria.
  
     0.444
sce2144
Uncharacterized protein conserved in cyanobacteria.
  
     0.438
sce4076
Similar to putative transposase.
  
     0.428
sce5701
Hypothetical protein predicted by Glimmer/Critica.
  
     0.405
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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