Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce5038Hypothetical protein. (178 aa)    
Predicted Functional Partners:
sce5037
Hypothetical protein.
       0.781
sce5036
Hypothetical protein; DnaJ-class molecular chaperone with C-terminal Zn finger domain.
       0.773
minE
Cell division topological specificity factor; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
   
  
 0.700
sce6076
Putative sugar nucleotide epimerase; Family membership.
 
      0.573
sce1385
Transcriptional regulator, TetR family; Family membership.
   
    0.545
sce8385
Uncharacterized protein conserved in bacteria.
   
    0.513
tif2
ECF-family RNA polymerase sigma factor; COG: Membrane carboxypeptidase (penicillin-binding protein); Belongs to the sigma-70 factor family. ECF subfamily.
       0.491
sce5035
Hypothetical protein predicted by Glimmer/Critica.
       0.491
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
    0.451
phoU
Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.
   
    0.438
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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