STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce5050BON domain hypothetical protein. (329 aa)    
Predicted Functional Partners:
sce0440
Hypothetical protein predicted by Glimmer/Critica; Belongs to the UPF0337 (CsbD) family.
  
    0.758
sce5028
Putative membrane protein.
  
    0.670
sce8716
Putative secreted protein.
  
    0.670
sce5049
Putative DNA mismatch repair protein; Family membership.
       0.572
otsA
Alpha,alpha-trehalose-phosphate synthase (UDP-forming); High confidence in function and specificity.
   
  
 0.570
sce3268
Alpha,alpha-trehalose-phosphate synthase (UDP-forming); Family membership.
   
  
 0.570
sce0299
LysM domain-containing protein; Unnamed protein product; Function unclear.
  
  
 0.518
sce5048
Probable oxidoreductase.
  
    0.467
sce5051
Transposase, IS4 family; High confidence in function and specificity.
       0.428
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.