Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce5059Metallophosphoesterase. (318 aa)    
Predicted Functional Partners:
sce5058
4'-phosphopantetheinyl transferase; High confidence in function and specificity; Belongs to the P-Pant transferase superfamily.
 
     0.823
chiB
Polyketide synthase; High confidence in function and specificity.
  
     0.647
sce3191
Polyketide synthase; Family membership.
 
     0.553
gltB1
Glutamate synthase (NADPH); High confidence in function and specificity.
  
    0.548
gltD
Glutamate synthase (NADPH); High confidence in function and specificity.
       0.540
sce3192
Polyketide synthase; Family membership.
 
   
 0.538
sce5062
Unnamed protein product; Family membership.
       0.533
chiC
Polyketide synthase; High confidence in function and specificity.
 
     0.532
chiF
Polyketide synthase; High confidence in function and specificity.
  
     0.531
chiE
Polyketide synthase; High confidence in function and specificity.
 
     0.525
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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