Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tolR5tolR protein; High confidence in function and specificity. (153 aa)    
Predicted Functional Partners:
tolQ3
tolQ protein; High confidence in function and specificity.
 
 
 0.978
tonB2
Putative TonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.934
tolQ1
Putative transport transmembrane protein, tolQ; High confidence in function and specificity.
 
 
 0.921
tolQ2
TolQ protein; Specificity unclear.
 
 
 0.910
sce4315
Biopolymer transport protein, putative; Specificity unclear.
 
 
 0.893
tonB1
Putative TonB protein; Specificity unclear.
 
 
 0.845
tolR4
tolR protein; High confidence in function and specificity.
 
    
0.841
sce0648
ompA-family exported protein; Family membership.
 
 
 
 0.745
sce7062
TonB-dependent receptor; Specificity unclear.
  
 
 0.724
sce8263
tonB family protein; Family membership.
  
 
 0.724
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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