Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce5088Peptidyl-dipeptidase Dcp; Family membership. (665 aa)    
Predicted Functional Partners:
sce5087
Hypothetical protein; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
       0.689
sce1250
Predicted metallopeptidase; Family membership.
  
   
 0.664
sce4363
Hypothetical protein predicted by Glimmer/Critica.
 
     0.632
sce2637
Peptidyl-glycine alpha-amidating monooxygenase precursor; High confidence in function and specificity.
 
     0.565
sce8834
Hypothetical protein; ABC-type antimicrobial peptide transport system permease component.
  
 
   0.544
purB
Adenylosuccinate lyase; Family membership; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
    0.532
sce3827
Low-density lipoprotein receptor-related protein.
  
     0.531
sce5674
Unnamed protein product; Family membership.
 
   
 0.529
sce3908
Probable Methyltransferase; Family membership.
  
     0.516
sce6661
Putative thrombospondin family protein.
  
     0.511
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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