Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce5089Putative Protein tyrosine/serine phosphatase. (346 aa)    
Predicted Functional Partners:
sce6017
Hypothetical protein.
  
     0.746
sce7717
Hypothetical protein predicted by Glimmer/Critica.
    
 
 0.740
sce2046
Hypothetical protein.
  
     0.727
sce5864
Response regulatory domain-containing protein; Unnamed protein product; Hypothetical protein.
  
 
 
 0.726
sce3827
Low-density lipoprotein receptor-related protein.
  
     0.704
sce2480
SAM-dependent methyltransferases; Family membership.
  
     0.680
sce2836
Putative membrane protein.
  
     0.673
sce8928
Hypothetical protein predicted by Glimmer/Critica.
  
     0.668
sce0958
Hypothetical protein predicted by Glimmer/Critica.
 
     0.666
sce7132
Putative membrane protein.
  
     0.665
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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