STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amyAAlpha-amylase; High confidence in function and specificity. (489 aa)    
Predicted Functional Partners:
sce7778
Maltose/maltodextrin transport permease homologue; Family membership.
  
  
 0.696
treS
Trehalose synthase; High confidence in function and specificity.
  
 
 0.658
gst12
Putative glutathione S-transferase; High confidence in function and specificity.
       0.631
glgA2
Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
 
  
 0.560
sce7780
Alpha-amylase family protein; Family membership.
 
     0.559
sce7422
Hypothetical protein.
 
 
 
 0.538
glgA
Put. Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
 
  
 0.529
sce1303
Glycogen operon protein; Family membership; Belongs to the glycosyl hydrolase 13 family.
  
  
 0.458
sce2378
Glycogen debranching enzyme; Family membership; Belongs to the glycosyl hydrolase 13 family.
  
  
 0.458
sce5092
Hypothetical protein predicted by Glimmer/Critica.
       0.447
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.