STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce5118Hypothetical protein predicted by Glimmer/Critica. (334 aa)    
Predicted Functional Partners:
sce3687
Hypothetical protein predicted by Glimmer/Critica.
  
  
 0.785
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
  
  
 0.785
glpQ
Glycerophosphodiester phosphodiesterase; Family membership.
       0.778
sce6491
moaA/nifB/pqqE family protein.
  
     0.725
sce5961
Hypothetical protein.
  
     0.689
sce1107
Hypothetical protein.
 
     0.681
sce5804
Putative outer membrane protein; Family membership.
  
     0.680
ctaA
Cytochrome aa3 controlling protein.
  
     0.679
sce7605
Hypothetical protein; Predicted metal-dependent membrane protease.
  
     0.678
sce8293
Lar_N domain-containing protein; Unnamed protein product.
  
     0.677
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.