STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exuTPermease of the major facilitator superfamily,probably glucarate/galactonate transport; Specificity unclear. (554 aa)    
Predicted Functional Partners:
gudD
Glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
  
 0.832
sce5158
Hypothetical protein.
     
 0.818
kduD
Gluconate dehydrogenase.
  
  
 0.783
kdgA2
KDPG and KHG aldolase; High confidence in function and specificity.
 
   
 0.690
sce5155
Put. 2-Dehydro-3-deoxygluconokinase; Family membership.
 
  
 0.686
mhpT
Permease of the major facilitator superfamily,putative 3-hydroxyphenylpropionate transporter; Specificity unclear.
  
   
 0.662
mtbA
Permease of the major facilitator superfamily,putative sugar transporter; Specificity unclear.
 
  
 0.481
sce1245
Altronate dehydratase.
  
 0.460
glcP
Permease of the major facilitator superfamily,probable glucose transporter; High confidence in function and specificity; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
  
   
 0.459
sce1223
Permease of the major facilitator superfamily; Specificity unclear.
  
   
 0.433
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.