STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kduDGluconate dehydrogenase. (257 aa)    
Predicted Functional Partners:
sce5158
Hypothetical protein.
     
 0.780
exuT
Permease of the major facilitator superfamily,probably glucarate/galactonate transport; Specificity unclear.
     
 0.776
gudD
Glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
     
 0.774
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family.
 
  
 0.740
kdgA2
KDPG and KHG aldolase; High confidence in function and specificity.
 
   
 0.609
sce5155
Put. 2-Dehydro-3-deoxygluconokinase; Family membership.
 
 
   0.594
sce4308
Dehydrogenase; Family membership.
  
     0.542
sce2387
Non-ribosomal peptide synthetase; Family membership.
  
 
 0.539
CAN91423.1
Gluconokinase; Unnamed protein product.
    
 0.517
topB
DNA topoisomerase III; High confidence in function and specificity.
    
 
 0.500
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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