STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce5518Putative membrane protein. (267 aa)    
Predicted Functional Partners:
sce5515
Hypothetical protein.
 
     0.816
sce5517
Hypothetical protein predicted by Glimmer/Critica.
       0.773
mgpS
ATP-dependent helicase; High confidence in function and specificity.
  
     0.733
sce4206
Diphosphomevalonate decarboxylase; Family membership.
   
 
 0.662
sce0416
Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).
 
    0.568
sce5519
Hypothetical protein predicted by Glimmer/Critica.
       0.560
sce2779
mutT/nudix family protein.
  
  
 0.555
sce2921
Tetratricopeptide repeat protein.
  
     0.539
sce4428
N-formylglutamate amidohydrolase.
  
     0.537
sce0296
FHA domain protein.
  
     0.513
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.