STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cysK6CysK6 protein; Family membership. (353 aa)    
Predicted Functional Partners:
metB1
Cystathionine gamma-synthase; Family membership.
 0.965
metB2
Cystathionine gamma-synthase.
 
 0.959
srpH1
SrpH1 protein; Family membership.
 
 0.920
srpH2
SrpH2 protein; Family membership.
 
 0.916
sce5074
Putative serineacetyltransferase.
 
 0.914
serC
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
  
 
 0.912
aspB1
Aspartate transaminase; Family membership.
    
 0.903
hoxH
Hypothetical protein; Coenzyme F420-reducing hydrogenase alpha subunit.
     
  0.900
sce6769
Selenium-binding protein; Function unclear.
     
  0.900
sce7326
O-acetyltransferase; Family membership.
 
 0.894
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.