STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scoA3-oxoacid CoA-transferase. (282 aa)    
Predicted Functional Partners:
scoB
3-oxoacid CoA-transferase.
 0.999
mvaB
Hydroxymethylglutaryl-CoA lyase.
 
 
 0.956
sce0048
enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase; Family membership; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.953
sce7555
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase; Family membership.
  
 
 0.953
pcaF
Putative beta-ketoadipyl CoA thiolase; Family membership; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.939
sce7652
Acetyl-CoA acyltransferase; Family membership; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.932
sce0251
Unnamed protein product; Family membership.
  
 
 0.922
sce7905
Glycerol-3-phosphate dehydrogenase (NAD(P)(+)); Unnamed protein product; Family membership; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
  
 
 0.922
sce2001
Putative 3-oxoacyl-[acyl-carrier-protein] reductase.
   
 0.906
sce6394
Putative Hydroxymethylglutaryl-CoA synthase.
    
 0.905
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.