STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce5882Hypothetical protein. (477 aa)    
Predicted Functional Partners:
yedX
Transthyretin-related protein; Family membership; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
     0.906
mtnB
put.Sugar aldolase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P). Belongs to the aldolase class II family. MtnB subfamily.
   
    0.821
araD
L-ribulose-phosphate 4-epimerase; High confidence in function and specificity.
   
    0.821
alc
Putative Allantoicase; Family membership; Belongs to the allantoicase family.
 
     0.799
sce4023
Putative uricase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.
 
     0.775
allB
Allantoinase; Family membership.
 
    0.761
sce0357
Hypothetical protein predicted by Glimmer/Critica; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.513
sce5883
PhoD_N domain-containing protein; Unnamed protein product; Specificity unclear.
       0.509
sce1601
Hypothetical protein.
  
     0.486
pucI
Putative Allantoin permease.
 
     0.472
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.