STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce5887Hypothetical protein predicted by Glimmer/Critica; Family membership. (861 aa)    
Predicted Functional Partners:
hisF
Imidazoleglycerol phosphate synthase, cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.
       0.803
sce3130
Putative secreted protein.
  
     0.758
sce0495
Hypothetical protein predicted by Glimmer/Critica.
  
     0.753
sce2836
Putative membrane protein.
  
     0.745
sce7783
Hypothetical protein; COG: Type V secretory pathway, adhesin AidA.
  
     0.744
sce0099
Probable PPE family protein.
  
     0.743
sce8705
Hypothetical protein predicted by Glimmer/Critica.
  
     0.730
sce0609
Hypothetical protein; FOG: TPR repeat.
  
     0.728
sce4262
Hypothetical protein.
  
     0.715
sce3638
Hypothetical protein predicted by Glimmer/Critica.
  
     0.713
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.