Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| pcrA | rpoB | sce0891 | sce0410 | ATP-depentend DNA helicase; High confidence in function and specificity. | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.618 |
| pcrA | sce0567 | sce0891 | sce0567 | ATP-depentend DNA helicase; High confidence in function and specificity. | Probable uvrD/Rep helicase family protein. | 0.900 |
| pcrA | sce5957 | sce0891 | sce5957 | ATP-depentend DNA helicase; High confidence in function and specificity. | DNA helicase; Unnamed protein product; Hypothetical protein. | 0.915 |
| pcrA | uvrD | sce0891 | sce3530 | ATP-depentend DNA helicase; High confidence in function and specificity. | ATP-dependent DNA helicase; High confidence in function and specificity. | 0.911 |
| prkA1 | sce0567 | sce3779 | sce0567 | Protein kinase; Family membership. | Probable uvrD/Rep helicase family protein. | 0.607 |
| prkA1 | sce1654 | sce3779 | sce1654 | Protein kinase; Family membership. | Hypothetical membrane-associated protein. | 0.580 |
| prkA1 | sce5854 | sce3779 | sce5854 | Protein kinase; Family membership. | Putative type IV pilus assembly protein; Family membership. | 0.721 |
| prkA1 | sce5957 | sce3779 | sce5957 | Protein kinase; Family membership. | DNA helicase; Unnamed protein product; Hypothetical protein. | 0.716 |
| rpoA | rpoB | sce7936 | sce0410 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| rpoA | rpoC | sce7936 | sce0411 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| rpoA | rpoZ | sce7936 | sce7258 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.998 |
| rpoA | sce5957 | sce7936 | sce5957 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA helicase; Unnamed protein product; Hypothetical protein. | 0.915 |
| rpoB | pcrA | sce0410 | sce0891 | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | ATP-depentend DNA helicase; High confidence in function and specificity. | 0.618 |
| rpoB | rpoA | sce0410 | sce7936 | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| rpoB | rpoC | sce0410 | sce0411 | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| rpoB | rpoZ | sce0410 | sce7258 | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.998 |
| rpoB | sce0567 | sce0410 | sce0567 | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Probable uvrD/Rep helicase family protein. | 0.496 |
| rpoB | sce5957 | sce0410 | sce5957 | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA helicase; Unnamed protein product; Hypothetical protein. | 0.951 |
| rpoB | uvrD | sce0410 | sce3530 | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | ATP-dependent DNA helicase; High confidence in function and specificity. | 0.562 |
| rpoC | rpoA | sce0411 | sce7936 | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
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