STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce6309Hypothetical protein predicted by Glimmer/Critica. (184 aa)    
Predicted Functional Partners:
sce6310
Hypothetical protein; Beta-lactamase class C and other penicillin binding proteins.
      0.869
sce5345
Putative beta-lactamase; Belongs to the class-A beta-lactamase family.
  
     0.739
sce6437
Hypothetical protein predicted by Glimmer/Critica.
  
     0.705
yfeW
Putative beta-lactamase precursor.
  
     0.680
sce1495
Putative beta-lactamase.
  
     0.662
sce3869
Hypothetical protein predicted by Glimmer/Critica.
  
     0.621
sce3868
Alkaline D-peptidase.
  
     0.612
sce7772
Carboxylesterase.
  
     0.587
sce5619
Putative penicillin-binding protein.
  
     0.562
sce6311
Hypothetical protein; Predicted lactoylglutathione lyase.
       0.517
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.