STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce6601Putative WD-40 repeat protein. (529 aa)    
Predicted Functional Partners:
sce6603
ECF-family RNA polymerase sigma factor; Family membership; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.938
sce6602
Hypothetical protein predicted by Glimmer/Critica.
       0.815
sce5360
Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
 
    0.770
sce8285
Putative secreted protein.
  
     0.705
sce1016
Hypothetical protein predicted by Glimmer/Critica.
  
     0.697
sce6604
Putative secreted protein.
       0.695
sce2311
Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats.
  
     0.672
sce0708
Probable phenazine biosynthesis protein; Family membership.
 
     0.668
sce4191
Putative membrane protein.
  
     0.655
sce4949
Hypothetical protein.
  
     0.624
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.