STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce6686Hypothetical protein; Function unclear. (362 aa)    
Predicted Functional Partners:
hemH2
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
    
 0.914
sce6685
SDR family short chain oxidoreductase; Specificity unclear; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.773
sce6684
Glycosyltransferase; Specificity unclear.
  
    0.601
rmlB1
dTDP-glucose 4,6-dehydratase; High confidence in function and specificity.
     
 0.548
napG
Putative ferredoxin; Family membership.
  
  
 0.499
sce0551
Hypothetical protein with NHL repeat; High confidence in function and specificity.
  
  
 0.427
sce2139
Hypothetical protein.
  
  
 0.427
hemD
Uroporphyrinogen-III synthase; Family membership.
  
  
 0.424
norB
Nitric oxide reductase; High confidence in function and specificity.
  
  
 0.412
sce8584
Nitric oxide reductase; High confidence in function and specificity.
  
  
 0.412
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.