STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce6702Hypothetical protein; FOG: TPR repeat. (1137 aa)    
Predicted Functional Partners:
sce3210
Hypothetical WD-repeat protein all2124.
  
 
  0.735
sce6701
Hypothetical membrane protein.
       0.705
sce4561
Unknown protein.
  
     0.660
hat
WD-40 repeat protein; High confidence in function and specificity.
  
 
  0.631
sce3630
WD-repeat protein.
 
 
 0.601
sce6703
Hypothetical protein.
 
    
0.559
sce3373
Hypothetical protein; Family membership.
  
     0.549
sce4551
Protein kinase; Family membership.
  
 
  0.546
sce4552
Protein kinase; Family membership.
  
 
  0.545
sce3623
Hypothetical protein; FOG: WD40 repeat.
 
 0.537
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.