STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce6911Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; Family membership; Belongs to the arginase family. (372 aa)    
Predicted Functional Partners:
sce5007
Putative Aldehyde dehydrogenase (NAD(+)); Family membership; Belongs to the aldehyde dehydrogenase family.
  
 0.912
sce9189
Aldehyde dehydrogenase (NAD(+)); Family membership; Belongs to the aldehyde dehydrogenase family.
  
 0.912
gatA1
Putative amidase; Family membership.
     
 0.900
gatA3
Putative amidase; Family membership; Belongs to the amidase family.
     
 0.900
gatA5
Amidase family protein; High confidence in function and specificity.
     
 0.900
gltB1
Glutamate synthase (NADPH); High confidence in function and specificity.
    
 0.828
gdhA1
Glutamate dehydrogenase; Family membership; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.825
gdhA2
Glutamate dehydrogenase; Family membership; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.825
gdhA3
Glutamate dehydrogenase (NADP(+)); High confidence in function and specificity; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.825
rocA
1-pyrroline-5-carboxylate dehydrogenase; High confidence in function and specificity.
  
 0.824
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.