STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce6963Hypothetical protein; Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5-phosphate oxidase. (291 aa)    
Predicted Functional Partners:
gst16
Probable glutathione S-transferase; Family membership; Belongs to the GST superfamily.
 
     0.882
sce6961
Transcriptional regulator, LysR family; Family membership; Belongs to the LysR transcriptional regulatory family.
 
     0.540
sce4856
Uncharacterized protein conserved in bacteria.
 
     0.528
pdxJ
Pyridoxine-5-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.
     
  0.499
sce6964
Sensor histidine kinase; Family membership.
       0.490
sce3254
Putative short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.418
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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