STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce7071Putative ABC-transporter; Specificity unclear. (507 aa)    
Predicted Functional Partners:
sce7072
Putative Sulfate-transporting ATPase; Family membership.
 0.999
sce7074
Hypothetical protein.
 
     0.882
sce7073
Hypothetical protein.
       0.793
otsA
Alpha,alpha-trehalose-phosphate synthase (UDP-forming); High confidence in function and specificity.
   
  
 0.665
sce3268
Alpha,alpha-trehalose-phosphate synthase (UDP-forming); Family membership.
   
  
 0.665
sce2666
Hypothetical protein.
 
    0.662
sce5108
Hypothetical protein predicted by Glimmer/Critica.
  
    0.611
sce7477
Hypothetical protein.
  
    0.611
sce8700
Putative membrane protein.
  
    0.611
msrA2
Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
  
 0.535
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.