STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce7103Hypothetical protein; Family membership. (718 aa)    
Predicted Functional Partners:
sce8803
Nicotianamine synthase, putative.
  
     0.727
sce6846
GH16 domain-containing protein; Unnamed protein product; Family membership.
 
   
 0.606
sce8993
Hypothetical protein; Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway.
  
     0.585
sce0174
Hypothetical protein; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
 
   0.570
sce2820
Hypothetical 27.5 kDa protein in SPO1-SIS1 intergenic region.
  
     0.519
sce3804
Putative ATP/GTP-binding protein.
  
     0.511
licS
Endo-beta-1,3-1,4 glucanase; High confidence in function and specificity.
 
   
 0.510
sce0694
Hydrolase, alpha/beta fold family protein.
  
 
   0.475
sce7672
Hypothetical protein.
  
     0.460
sce6665
Hypothetical protein.
  
     0.451
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.