STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce7551OmpA-like outer membrane domain protein. (689 aa)    
Predicted Functional Partners:
ompA2
Probable outer membrane protein; Family membership.
  
     0.699
sce1706
Outer membrane protein.
  
 
 
 0.689
sce5128
Putative outer membrane protein.
  
 
 
 0.665
sce6431
Putative outer membrane protein.
  
 
 
 0.660
ompA1
Outer membrane protein.
  
     0.643
sce2920
Tetratricopeptide repeat protein.
  
 
   0.632
sce2921
Tetratricopeptide repeat protein.
 
 
 
 0.612
sce0252
Hypothetical protein predicted by Glimmer/Critica; Family membership.
  
 
   0.611
sce3913
Protein kinase; Family membership.
 
 
 
 0.596
sce9272
Hypothetical protein predicted by Glimmer/Critica.
  
 
   0.596
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.