STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pahxPahx protein; Phytanoyl-CoA dioxygenase. (261 aa)    
Predicted Functional Partners:
sce7582
Aldo-keto reductase family 1; Family membership.
       0.807
sce7581
Hypothetical protein predicted by Glimmer/Critica.
       0.757
sce6765
Hypothetical protein predicted by Glimmer/Critica.
  
     0.748
CAN92074.1
Pseudogene.
  
     0.701
sce2468
Hypothetical protein predicted by Glimmer/Critica.
  
     0.694
sce2350
Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains.
  
     0.668
sce1917
Hypothetical protein.
  
     0.656
sce4169
Hypothetical protein.
  
     0.645
sce9262
Hypothetical protein.
  
     0.639
sce5384
Membrane protease subunits, stomatin/prohibitin homologs.
  
     0.634
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.