STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce7622Hypothetical protein predicted by Glimmer/Critica. (312 aa)    
Predicted Functional Partners:
dacA
Hypothetical protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
 
  
 0.988
folP
Dihydropteroate synthase; Family membership.
       0.818
gspL
Putative general secretion pathway protein L; Family membership.
  
     0.764
gspK
General secretion pathway protein K; Family membership.
  
     0.754
sce4278
Hypothetical protein; FOG: WD40 repeat.
  
     0.730
sce2531
Putative secreted protein.
  
     0.705
gspJ
Putative general secretion pathway protein J; Specificity unclear.
  
     0.702
sce1107
Hypothetical protein.
 
     0.700
sce9314
Putative general secretion pathway protein C; Function unclear.
  
     0.699
sce2916
Hypothetical protein predicted by Glimmer/Critica.
  
    0.686
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.