STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce7637DNA-directed DNA polymerase; High confidence in function and specificity. (215 aa)    
Predicted Functional Partners:
sce2980
Hypothetical protein; Putative Uracil-DNA glycosylase.
     
 0.918
sce1734
Putative DNA polymerase related protein; High confidence in function and specificity.
  
  
0.915
sce7638
Hypothetical protein predicted by Glimmer/Critica.
       0.773
sce8612
Single-stranded DNA binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
   
   0.719
gmk
Putative Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
      0.707
sce7974
Putative exported peptidase; Family membership.
   
   0.605
sce1675
Putative peptidase.
  
    0.580
ssb
ssDNA-binding protein; High confidence in function and specificity.
   
   0.411
sce2627
Single-strand binding protein; High confidence in function and specificity.
   
   0.411
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.