Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CAN98898.1 | argS | sce_pseudo_15 | sce7660 | Pseudogene. | Arginine--tRNA ligase; High confidence in function and specificity. | 0.902 |
CAN98898.1 | asnS | sce_pseudo_15 | sce5915 | Pseudogene. | asparaginyl-tRNA synthetase; High confidence in function and specificity. | 0.793 |
CAN98898.1 | gltX2 | sce_pseudo_15 | sce0573 | Pseudogene. | Glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | 0.440 |
CAN98898.1 | guaA1 | sce_pseudo_15 | sce3679 | Pseudogene. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.729 |
CAN98898.1 | ileS | sce_pseudo_15 | sce4236 | Pseudogene. | isoleucyl-tRNA synthetase Ia. | 0.935 |
CAN98898.1 | leuS | sce_pseudo_15 | sce7417 | Pseudogene. | Leucine--tRNA ligase; High confidence in function and specificity; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.902 |
CAN98898.1 | lysS | sce_pseudo_15 | sce1634 | Pseudogene. | Lysine--tRNA ligase; Family membership; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.929 |
CAN98898.1 | pheT | sce_pseudo_15 | sce3390 | Pseudogene. | phenylalanyl-tRNA synthetase, beta subunit; Family membership; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.847 |
CAN98898.1 | proS | sce_pseudo_15 | sce3768 | Pseudogene. | Proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). | 0.906 |
CAN98898.1 | tyrS | sce_pseudo_15 | sce0509 | Pseudogene. | Tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily. | 0.468 |
argS | CAN98898.1 | sce7660 | sce_pseudo_15 | Arginine--tRNA ligase; High confidence in function and specificity. | Pseudogene. | 0.902 |
argS | asnS | sce7660 | sce5915 | Arginine--tRNA ligase; High confidence in function and specificity. | asparaginyl-tRNA synthetase; High confidence in function and specificity. | 0.898 |
argS | gltX2 | sce7660 | sce0573 | Arginine--tRNA ligase; High confidence in function and specificity. | Glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | 0.910 |
argS | guaA1 | sce7660 | sce3679 | Arginine--tRNA ligase; High confidence in function and specificity. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.929 |
argS | ileS | sce7660 | sce4236 | Arginine--tRNA ligase; High confidence in function and specificity. | isoleucyl-tRNA synthetase Ia. | 0.985 |
argS | leuS | sce7660 | sce7417 | Arginine--tRNA ligase; High confidence in function and specificity. | Leucine--tRNA ligase; High confidence in function and specificity; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.954 |
argS | lysS | sce7660 | sce1634 | Arginine--tRNA ligase; High confidence in function and specificity. | Lysine--tRNA ligase; Family membership; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.936 |
argS | pheT | sce7660 | sce3390 | Arginine--tRNA ligase; High confidence in function and specificity. | phenylalanyl-tRNA synthetase, beta subunit; Family membership; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.909 |
argS | proS | sce7660 | sce3768 | Arginine--tRNA ligase; High confidence in function and specificity. | Proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). | 0.983 |
argS | tyrS | sce7660 | sce0509 | Arginine--tRNA ligase; High confidence in function and specificity. | Tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily. | 0.906 |
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