STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgiYBacteriophage phiC31 resistance gene; Family membership. (1215 aa)    
Predicted Functional Partners:
sce0273
Hypothetical protein.
 
  
 0.905
sce0272
Hypothetical protein.
 
  
 0.902
SC4G2.10
SC4G2.10, pglZ; bacteriophage (phiC31) resistance gene pglZ.
 
   
 0.900
sce7676
Putative DNA methylase; Family membership.
 
    0.892
sce7686
Putative ATP/GTP binding protein.
 
     0.878
sce4874
Hypothetical protein.
  
  
 0.874
sce7687
ATP-dependent helicase; Family membership.
 
     0.871
sce4500
Hypothetical protein predicted by Glimmer/Critica.
  
    0.826
sce8210
Putative DNA helicase; Family membership.
  
    0.826
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
   0.825
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.