STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce7780Alpha-amylase family protein; Family membership. (653 aa)    
Predicted Functional Partners:
sce7778
Maltose/maltodextrin transport permease homologue; Family membership.
 
  
 0.981
sce7777
Put. Maltose permease; Family membership.
 
  
 0.851
sce7779
ABC-type sugar transport systems ATPase component; Family membership; Belongs to the ABC transporter superfamily.
 
  
 0.793
treS
Trehalose synthase; High confidence in function and specificity.
 
0.773
sce4566
Amino acid transporter; Family membership.
    
 0.701
sce4916
Putative amino acid permease; Family membership.
    
 0.701
sce7359
Amino acid transporter; Family membership.
    
 0.701
sce3275
Hypothetical serine rich protein.
  
     0.595
sce1303
Glycogen operon protein; Family membership; Belongs to the glycosyl hydrolase 13 family.
 
  
 0.577
glgA2
Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
 
  
 0.561
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.