STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce7930Fe-S oxidoreductase. (364 aa)    
Predicted Functional Partners:
sce7929
Sensor histidine kinase; Family membership.
       0.780
sce7931
Sensor histidine kinase; Family membership.
 
     0.723
sce2797
Putative membrane protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.503
sce7555
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase; Family membership.
 
  
 0.494
glpD
GlpD protein; Family membership.
 
  
 0.449
sce8320
Hypothetical protein; Predicted transcriptional regulators.
  
     0.434
sce1616
TPR domain protein.
 
     0.426
gap
Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); High confidence in function and specificity; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.426
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
       0.418
sce0626
Putative electron transfer flavoprotein beta-subunit; Family membership.
 
  
 0.412
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.