STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce8066Exported OmpA domain protein; Family membership. (610 aa)    
Predicted Functional Partners:
sce8067
Conserved repeat domain protein.
 
   0.809
sce1706
Outer membrane protein.
  
 
 0.776
sce5128
Putative outer membrane protein.
  
 
 
 0.776
sce6431
Putative outer membrane protein.
  
 
 
 0.775
sce1079
Universal stress protein family; Family membership.
   
    0.556
sce7389
Universal stress protein; Family membership.
   
    0.556
sce9312
tonB family protein; Family membership.
  
     0.536
sce5891
Gamma-glutamyl carboxylase.
  
    0.495
sce0648
ompA-family exported protein; Family membership.
  
     0.486
sce9136
Vitamin K-dependent gamma-carboxylase; High confidence in function and specificity.
  
    0.479
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.