STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce8093Putative oxidoreductase; Family membership; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (268 aa)    
Predicted Functional Partners:
mxcG
Nonribosomal peptide synthetase; High confidence in function and specificity.
      0.908
ltaA
LtaA protein; Family membership.
    
  0.903
sce8223
Hypothetical protein.
    
  0.903
sce8219
AMP-dependent synthetase and ligase; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 
    0.901
tdh
Threonine 3-dehydrogenase; Family membership.
     
  0.900
kbl
Glycine C-acetyltransferase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.
    
  0.900
sce8255
Non-ribosomal peptide synthetase; Family membership.
 
    0.898
sce8262
Non-ribosomal peptide synthetase; Family membership.
 
  
 0.710
gcvP2
Glycine dehydrogenase (decarboxylating); Family membership.
 
      0.630
sce6685
SDR family short chain oxidoreductase; Specificity unclear; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.594
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.