STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce8342Uncharacterized flavoprotein. (240 aa)    
Predicted Functional Partners:
nos
Nitric-oxide synthase, oxygenase subunit; Family membership.
  
  
 0.626
rubY
RubY protein; High confidence in function and specificity.
 
  
 0.493
nasD
Nitrite reductase (NAD(P)H).
  
  
 0.486
nirB1
Nitrite reductase; High confidence in function and specificity; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
  
 0.486
nirB2
Nitrite reductase; High confidence in function and specificity; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
  
 0.486
sce7526
Hypothetical protein.
 
     0.482
sce7807
Histidine kinase; Unnamed protein product; Family membership.
 
   
 0.462
pitX1
Putative Pit accessory protein; Function unclear.
   
    0.459
pitX2
Putative Pit accessory protein; Function unclear.
   
    0.459
wecD
Hypothetical protein; Histone acetyltransferase HPA2 and related acetyltransferases.
  
     0.444
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.