STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce8349Glycosyltransferase; Family membership. (802 aa)    
Predicted Functional Partners:
sce8350
Uncharacterized protein conserved in bacteria.
  
  
 0.804
sce8348
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.773
topB
DNA topoisomerase III; High confidence in function and specificity.
   
 
 0.733
rkpK
Hypothetical protein; Predicted UDP-glucose 6-dehydrogenase.
  
  
 0.711
glf
UDP-galactopyranose mutase; High confidence in function and specificity.
  
  
 0.699
sce8351
Putative secreted protein.
       0.682
sce6794
Nucleotidyltransferase; Family membership.
  
  
 0.674
mnaA
UDP-N-acetylglucosamine 2-epimerase; High confidence in function and specificity; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.669
sce6684
Glycosyltransferase; Specificity unclear.
 
  
 0.617
galE5
GalE5 protein; High confidence in function and specificity.
  
  
 0.611
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.