STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce8438Hypothetical protein; DnaJ-class molecular chaperone with C-terminal Zn finger domain. (936 aa)    
Predicted Functional Partners:
sce2387
Non-ribosomal peptide synthetase; Family membership.
   
 
 0.855
sce8262
Non-ribosomal peptide synthetase; Family membership.
    
 
 0.847
sce3861
Transcriptional regulator, MerR family; Family membership.
 
 0.839
grpE
Chloroplast GrpE protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP [...]
 
 
 0.836
sce1616
TPR domain protein.
  
 
 0.812
sce0609
Hypothetical protein; FOG: TPR repeat.
  
 
  0.805
trmA
RNA methyltransferase; Family membership; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
 
 
   0.804
sce3131
Hypothetical protein predicted by Glimmer/Critica.
  
 
   0.802
sce6521
Posible heat shock protein.
 
 0.800
sce9355
Cellulose synthase 1 operon protein C precursor.
  
 
  0.796
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.