STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce8771Putative old protein; Family membership. (824 aa)    
Predicted Functional Partners:
sce7812
Hypothetical protein predicted by Glimmer/Critica.
  
     0.761
sce0330
Hypothetical protein.
  
     0.705
sce6146
Hypothetical protein; Predicted ATPase.
 
    0.686
sce0319
Probable DNA modification methyltransferase.
  
  
 0.668
sce5520
Probable type I restriction-modification system,M subunit.
  
  
 0.668
sce8509
Probable type I restriction-modification system,M subunit.
  
  
 0.668
sce5170
WD-repeat protein.
  
    0.649
hsdS
Subunit S of type I restriction-modification system.
  
  
 0.648
sce2660
Unknown protein; Predicted phosphohydrolases.
  
     0.604
sce6624
Hypothetical protein predicted by Glimmer/Critica.
  
    0.593
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.