STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce8904Hypothetical protein predicted by Glimmer/Critica; Belongs to the glycosyl hydrolase 43 family. (434 aa)    
Predicted Functional Partners:
sce1247
Hypothetical protein, conserved.
 
     0.910
sce2693
Putative beta-xylosidase; Family membership.
 
     0.829
sce6693
O-Glycosyl hydrolase; Specificity unclear.
   
 0.824
sce1246
Putative Alpha-arabinofuranosidase; Family membership.
   
 0.784
celG
Cellulase; High confidence in function and specificity; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
   
 0.773
sce3040
Hypothetical protein.
  
    0.762
sce6752
Hypothetical protein.
  
     0.761
sce4079
Hypothetical protein predicted by Glimmer/Critica.
 
     0.758
sce1489
Specificity unclear.
  
     0.757
sce0966
Hypothetical protein.
 
  
 0.749
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.