STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce9073Hypothetical protein. (468 aa)    
Predicted Functional Partners:
sce9072
Conserved hypothetical protein (YcaO-like family).
 
  
 0.954
sce9066
Conserved domain protein.
 
  
 0.837
sce0540
Hypothetical protein.
 
  
 0.808
sce0791
Hypothetical protein.
 
  
 0.808
sce7124
Hypothetical protein.
  
 0.808
sce8753
Hypothetical protein; Function unclear.
 
  
 0.808
sce9074
ABC transporter, ATP-binding protein.
       0.773
sce9075
Hypothetical protein; ABC-type Na+ efflux pump permease component.
       0.773
sce5176
Conserved hypothetical protein DUF181.
 
  
 0.721
sce0227
Conserved domain protein.
 
  
 0.665
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.