STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspDGeneral secretion pahtway protein D; Specificity unclear. (864 aa)    
Predicted Functional Partners:
gspC2
General secretion pathway protein C fragment; Family membership.
 
 
 0.987
sce0364
Putative general secretion pathway protein C; Family membership.
 
 
 0.973
gspC1
General secretion pathway protein C; Family membership.
 
 
 0.972
sce9314
Putative general secretion pathway protein C; Function unclear.
 
 
 0.969
gspF
General secretion pathway protein F.
 
  
 0.953
gspE2
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.939
gspJ
Putative general secretion pathway protein J; Specificity unclear.
 
  
 0.911
gspK
General secretion pathway protein K; Family membership.
 
   
 0.904
gspL
Putative general secretion pathway protein L; Family membership.
 
  
 0.873
sce2077
Probable serine protease; Family membership.
  
 
 0.872
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.